Showing posts with label pathology. Show all posts
Showing posts with label pathology. Show all posts

Tuesday, 2 July 2019

[Medical toxicology] Introduction

Medical toxicologists specialise in diseases caused by poisons.
This is a pathology discipline.
There is significant overlap with emergency medicine and poisoning cases are often seen in paediatrics.

 

Etymology

  • Latin toxicum, toxicī = poison
  • Ancient Greek λογία (logia) = study

Terminology

  • Poison: a substance, which can severely harm an exposed organism.
  • Toxin: a poison, which is produced within a living organism.
  • Venom: a toxin, which is inserted into another organism, either predator or prey, with the intention of harming the victim.


History taking

 

Physical examination

 

Blog page: Poison database

 

Common diseases:

        [Medical microbiology] Introduction

        Medical microbiologists study micro-organisms, particularly pathogens.
        This is a pathology discipline.
        There is significant overlap with infectiology. 

         

        Etymology

        Ancient Greek μικρός (mikrós) = small
        Ancient Greek βίος (bíos) = bio-, life
        Ancient Greek λογία (logia) = study

         

        Responsibilities

        • Giving advice on the best samples to collect to diagnose an infection, such as a swab, blood test or urine test.
        • Working with scientists in the laboratory to discover what’s causing the infection.
        • Giving advice about how to treat the infection before the cause has been identified, and after.
        • Making sure antibiotics are prescribed and used appropriately, by advising on patient management and producing treatment guidelines for a variety of conditions.
        • Promoting measures to prevent and control the spread of diseases.

         

        Investigations

        [Immunology] Introduction

        Immunologists specialise in diseases of the immune system, including allergies. The spleen and bone marrow are closely associated with immunological diseases.
        There is significant overlap with rheumatology, haematology, and medical genetics.
        This is a pathology discipline.  

         

        Etymology

        Latin immūnis, immūnis, immūne = exempt, immune
        Ancient Greek λογία (logia) = study

        Immunology = the study of immunity (resistance against infectious diseases)

         

        Subspecialties

        • Allergy medicine / allergology

         

        Investigations

           

          History taking

           

          Physical examination

           

          Key presenting complaints, reasons for referral


          Immune system diseases 


          Relevant diseases

          [Histopathology] Introduction

          Histopathologists study tissues and cells for evidence of disease.
          This is a pathology discipline.

           

          Etymology

          Ancient Greek ἱστός (histós) = web, tissue
          Ancient Greek πάθος (páthos) = disease
          Ancient Greek λογία (logia) = study

           

          Responsibilities

          • Examination and dissection of surgical resection specimens, to select the most appropriate samples for microscope slides
          • Microscopic examination of tissues, with subsequent construction of clinical reports
          • Carrying out fine-needle aspirations
          • Carrying out autopsies
          • Identifying, grading and staging malignancies in tissue biopsies

          [Haematology] Introduction

          Haematologists specialise in diseases of the blood. This includes the specialised blood cells and their proteins, particularly haemoglobin.
          The spleen and bone marrow are closely associated with haematological diseases.
          There is significant overlap with the fields of oncology and immunology.
          This is a pathology discipline.  

           

          Subspecialties

          • Haemato-oncology

           

          Etymology

          Ancient Greek αἷμα (haîma) = blood
          Ancient Greek λογία (logia) = study

           

          Responsibilities

          • Providing care to patients from their first blood test through to diagnosis and treatment.
          • Blood transfusion.
          • Marrow stem cell transplantation.
          • Genetic testing.
          • Guiding decisions for chemotherapy and other treatments.
          • Giving advice to GPs and other hospital specialists.

           

          Investigations

           

          Relevant problems:

          • Anaemia  
          • Thrombocytopenia
          • Leukopenia
          • Pancytopenia
          • Coagulopathies 
            • Haemophilias
          • Malignancies of the blood and bone marrow 
          • Paraproteinaemia   

           

          Haemic and lymphatic diseases

           

          Relevant diseases:

            [Medical genetics] Introduction

            Medical geneticists specialise in diseases of the karyotype and genotype of a patient.
            There is significant overlap with paediatrics.
            This is a pathology discipline.  

             

            Etymology

            Latin medicus, medica, medicum = healing, curative, medical
            Ancient Greek γένεσις (génesis) = origin

             

            Subspecialties

            • Cytogenetics
            • Molecular genetics

             

            Responsibilities

            • Counselling patients and their relatives about the implications of a diagnosis and the risks of inheritance
            • Determining the type and number of chromosomes 
            • Making prenatal diagnoses 
            • Predicting the severity of disease from the genotype (e.g. counting gene duplications, microsatellite expansions, etc.)
            • Sequencing a particular gene to identify mutations
            • Screening for a known DNA sequence (e.g. known gene mutations)

             

            Investigations 

            • Deletion analysis  
            • Dosage analysis 
            • Linkage analysis   
            • Methylation analysis 
            • Microsatellite analysis

            Screening for known mutations

            • Comparative genomic hybridization (CGH) 
            • Karyotype test
            • Fluorescence in situ hybridization (FISH)
            • Chemical cleavage of mismatch
            • Multiplex ligation-dependent probe amplification (MLPA)
            • Next generation sequencing (NGS) 
            • Oligonucleotide ligation assay
            • Polymerase chain reaction (PCR)
            • Reverse Transcriptase-Polymerase chain reaction (RT-PCR)
            • Southern blot analysis  

            Identifying unknown mutations

            • Chemical cleavage of mismatch
            • Denaturing Gradient Gel Electrophoresis (DGGE)
            • Heteroduplex analysis
            • Multiplex ligation-dependent probe amplification (MLPA) 
            • Next generation sequencing (NGS) 
            • Oligonucleotide ligation assay
            • Protein truncation test
            • Restriction fragment length polymorphism (RFLP)
            • Reverse Transcriptase-Polymerase chain reaction (RT-PCR) 
            • Single Strand Conformational Polymorphism (SSCP) 

             

            History taking 

            The history involves being able to construct an accurate and detailed family tree with all available information.

             

            Physical examination

             The physical examination should be guided by both the presenting problems, and the suspected diagnoses. Many genetic diseases are strongly associated with a characteristic phenotype. A facies is a physical appearance which strongly points to a diagnosis.

             

            Genetic diseases sorted by frequency

             

            Inborn genetic diseases

            [Forensic pathology] Introduction

            Forensic pathologists study bodies to determine cause of death.
            This is a pathology discipline. 

            Etymology

            Latin forēnsis, forēnsis, forēnse = of the market or forum
            Ancient Greek πάθος (páthos) = disease
            Ancient Greek λογία (logia) = study

             

            Responsibilities

            Performing post mortems for medical and legal purposes, to understand the cause and manner of death.

            [Medical biochemistry] Introduction

            Medical biochemists specialise in diseases of the chemistry of the human body.
            This is a pathology discipline.  

             

            Etymology

            Ancient Greek βίος (bíos) = bio-, life

            Ancient Greek χυμεία (khumeía) = art of alloying metals
            Ancient Greek χημεία (chimeía) = chemistry
            Arabic كِيمِيَاءاَل (al-) + (kīmiyāʾ) = the chemistry
            Latin alchēmista, alchēmistae = alchemist

             

            Investigations

             

            Relevant diseases

              [Pathology] Introduction

              Pathologists specialise in the diagnosis and monitoring of disease using samples of tissues and fluids from patients.

               

              Etymology

              Ancient Greek πάθος (páthos) = disease
              Ancient Greek λογία (logia) = study

              Pathology = the study of disease

               

              Responsibilities

              • Obtaining and interpreting evidence which confirms or excludes a potential diagnosis. 
              • Obtaining and interpreting information about the physiological status of a patient, which facilitates the monitoring of many diseases.
              • Undertaking pre-clinical research in the labs
              Classically pathologists would have little contact with patients, but over time the role has become very diverse and subspecialised. There are many opportunities for patient contact and clinical work.
              • Outpatient clinics

               

              Subspecialties

              Monday, 18 February 2019

              [Medical microbiology] Investigations

              Medical microbiology homepage


              [Haematology] Investigations

              Haematology homepage


              [Immunology] Investigations

              Immunology homepage 


              [Medical biochemistry] Investigations

              Biochemistry homepage 

               

              Blood

              Faeces

              Urine

              Urine drugs of abuse

              Biochemistry homepage  

                

              Clinical indications:

              Screen for recent use of drugs of abuse. Seven drugs of abuse are included in the screen, these are:
              1. Amphetamines / MDMA
              2. Benzodiazepines
              3. Cannabis (THC)
              4. Cocaine
              5. Methadone metabolite (EDDP)
              6. Opiates
              7. Heroin metabolite (6-AM)

               

              Specimen type: 

              • Urine

               

              Sample type: 

              • Random Urine

               

              Turnaround time: 

              • Inpatient: 6 hours 
              • Outpatient: 24 hours 
              • GP: 24 hours

              Urine steroid profile

              Biochemistry homepage  

               

              Clinical indications:

              • Used for the identification of inborn errors of steroid metabolism. 
              • Other uses include investigation of steroid metabolism in non-endocrine disease (e.g. liver disease) 
              • Effects of drugs
              • Herbal remedies 
              • Illegal substances

               

              Specimen type: 

              • Urine

               

              Sample type: 

              • Random urine
              • 24 Hour Urine

               

              Turnaround time: 

              • 2 - 3 weeks

              Urine protein

              Biochemistry homepage  

               

              Clinical indications:

              • Measurement of total protein in urine is important in the diagnosis and treatment of diseases associated with renal, cardiac and thyroid function.
              • Increased levels of urine protein may also be present following strenuous exercise
              • Monoclonal gammopathies 
              • Urinary tract infections

               

              Specimen type: 

              • Urine

               

              Sample type: 

              • Random urine
              • 24 Hour Urine

               

              Turnaround time: 

              • Inpatient: 6 hours 
              • Outpatient: 24 hours
              • GP: 24 hours 

               

              Reference interval:

              • 24 hour urine: 0.05 - 0.08g/24 hour (at rest) 
              • Random urine: 0 - 50 mg/mmol creatinine

              Urine osmolality

              Biochemistry homepage 

               

              Clinical indications:

              • Determination of serum and urine osmolality can be useful in the assessment of electrolyte and acid-base disorders. 
              • Comparison of serum and urine osmolalities can determine the status of renal water regulation in settings of severe electrolyte disturbances as might occur in diabetes insipidus or the syndrome of inappropriate anti-diuretic hormone. 
              • Osmolality may also be performed as part of a water deprivation test (used in the diagnosis of diabetes insipidus) or where there is suspicion of ingestion of an osmotically active substance such as ethanol, methanol or ethylene glycol. 

               

              Specimen type: 

              • Urine

               

              Sample type: 

              • Random Urine

               

              Turnaround time:

              • Inpatient: 24 hours
              • Outpatient: 24 hours
              • GP: 24 hours

               

              Reference interval:

              300-900 mOsm/kg

              Tuesday, 12 February 2019

              Anti-NMDA receptor antibodies

              This is a test for an antibody (immunoglobulin) in the serum.

              N-methyl-D-aspartate (NMDA) receptor antibodies are associated with the different sub units of the NMDA receptor.

               

              Clinical indications:

              • Antibodies to the delta or NR2 subunits of NMDAR are associated with limbic encephalitis, systemic lupus erythematosus (SLE), ataxia and epilepsia partialis continua. 
              • Antibodies against the NR1, NR2A and NR2B subunits of the NMDAR are found in patients presenting with psychiatric symptoms, amnesia, seizures, dyskinesias, autonomic dysfunction and loss of consciousness. 
              • Antibodies against the NR1 or NR2 subunits of the NMDAR: Anti-NMDA receptor encephalitis

               

              Specimen type: 

              Blood

              Sample type: 

              Serum (can be paired with CSF sample)

              Turnaround time: 

              3 weeks

               

              Immunology homepage 

              Anti-GAD

              This is a test for an antibody (immunoglobulin) in the serum. This antibody binds to glutamic acid decarboxylase (anti-GAD).

               

              Clinical indications:

               

              Specimen type: 

              Blood

               

              Sample type: 

              Serum

               

              Turnaround time: 

              3 weeks

               

              Immunology homepage

              Sunday, 27 January 2019

              Voltage gated Ca2+ Antibodies

              This is a test for a group of antibodies (immunoglobulin) in the serum. 


              Clinical indications:

              The assay is positive in


              Specimen type: 

              Blood

               

              Sample type: 

              Serum

               

              Turnaround time: 

              4 weeks

               

              Immunology homepage